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During the last three decades, intensive campaigns and experiments have been conducted for acquiring micrometeorological data in the Amazonian ecosystems, which has increased our understanding of the variation, especially seasonally, of the total energy available for the atmospheric heating process by the surface, evapotranspiration and carbon exchanges. However, the measurements obtained by such experiments generally cover small areas and are not representative of the spatial variability of these processes. This chapter aims to discuss several algorithms developed to estimate surface energy and carbon fluxes combining satellite data and micrometeorological observations, highlighting the potentialities and limitations of such models for applications in the Amazon region. We show that the use of these models presents an important role in understanding the spatial and temporal patterns of biophysical surface parameters in a region where most of the information is local. Data generated may be used as inputs in earth system surface models allowing the evaluation of the impact, both in regional as well as global scales, caused by land-use and land-cover changes.